PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g18830.1.p
Common NameBRADI_4g18830, LOC100842487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 305aa    MW: 34801.1 Da    PI: 7.8231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g18830.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011112134223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C+++++++ +L  Hi+  H
  Bradi4g18830.1.p 112 SCSVCSRVYPTSRLLSIHISEaH 134
                       6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551184109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086109IPR007087Zinc finger, C2H2
SMARTSM003555111134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
SMARTSM003555.1149174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQQKPAEAME VCARGDDGET EAPKALGTSL GFWAGTRRRL APDDPFFAAG DMERELLAKH  60
VALDLSDDDR YQLEKMDVAS VSTVCCPIAG CGAHLDCLED FEDHYSTRHT ASCSVCSRVY  120
PTSRLLSIHI SEAHDSFFEA KVAHGFPMYE CLVEGCVVKL KTYKSRQQHL IDKHQFPKSF  180
EFFKKAQPSQ RHRQKYHWRY KGEETRDTLM DVDGKSPRQT KWRYRPKQHD HKESIENKHH  240
HKEAKDNDME VEQKMDELTS AVSKLSTADS TPSSITFGHR RSRGLTFVPR SIKQNKQVSQ  300
PEAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577552.10.0PREDICTED: zinc finger protein 511
TrEMBLI1ILN30.0I1ILN3_BRADI; Uncharacterized protein
STRINGBRADI4G18830.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.19e-93zinc ion binding;nucleic acid binding;zinc ion binding